walaj / VariantBam

Filtering and profiling of next-generational sequencing data using region-specific rules

walaj/VariantBam Issues

variant command overestimates max coverage with Nanopore reads
Updated a year ago4
-b option truncates output at 10k
Closed a year ago1
Installing VariantBam
Closed a year ago1
Motif selection bam read error
Updated 2 years ago2
Test runs - bams missing
Updated 5 years ago
Soft-clipping with linked-region filter
Updated 5 years ago
Another possible problem with Example use 7: not all decoy reads filtered
Closed 5 years ago2
Possible problem with Example use 7: cannot filter out reads
Closed 6 years ago2
-b option truncates output at 10k
Closed 6 years ago4
Options for parallelization/multi-core runs
Updated 7 years ago10
Add QCfail flag instead of removing reads for maximum coverage
Closed 7 years ago6
Slow reading of CRAM platinum genome
Closed 7 years ago3
VCF parsing error on extra linked regions with long ANN key/value in INFO field
Closed 7 years ago2
`-q` outputs no result
Closed 8 years ago1
It should be `mate_mapped` in README instead of `mapped_mate`
Closed 8 years ago1
Can't build in boost static libs from default install locations
Closed 8 years ago4
CPPFLAGS and LDFLAGS not propagated to child projects
Closed 8 years ago4
Referring to target sequences
Closed 8 years ago1
Crash (Signal 11) when trying to process an unsorted BAM
Closed 9 years ago4
Possible problem with use case 4
Closed 9 years ago2
Usage message indicates '-g' and '-r' options are required.
Closed 9 years ago1