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wa3dbk / roary

Pan-genome nextflow pipeline which uses fasta input files for Prokka and Roary before generating visualisations

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nf-core/roary

Pan-genome nextflow pipeline which uses fasta input files for Prokka and Roary before generating visualisations

Build Status Nextflow

install with bioconda Docker Singularity Container available

Introduction

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.

Documentation

The nf-core/roary pipeline comes with documentation about the pipeline, found in the docs/ directory:

  1. Installation
  2. Pipeline configuration
  3. Running the pipeline
  4. Output and how to interpret the results
  5. Troubleshooting

About

Pan-genome nextflow pipeline which uses fasta input files for Prokka and Roary before generating visualisations

License:MIT License

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