Vytas Zickus's repositories
BOE_323258
Python code used for micro PIV analysis for the "3D + time blood flow mapping using SPIM-microPIV in the developing zebrafish heart " paper.
piv-gui-python
A Qt GUI for inspecting correlation matrices of PIV analysis. This GUI currently uses correlation data format of OpenPIV (www.openpiv.net).
stripe_elimination
MATLAB code from "Eliminating Stripe Artifactsin Light-Sheet Fluorescence Imaging"
ClearMap-Debug
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
documentation-theme-jekyll
A Jekyll-based theme designed for documentation and help systems. See the link for detailed instructions on setting up and configuring everything.
FisherInformation
Various Matlab code related to photon-statistics / Fisher Information Theory and microscopy
hacklab-training
Training syllabuses for Edinburgh Hacklab
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
image-registration-summer-school-2018
Python notebooks and data for learning about image registration. Hosted at a summer school
image_lddmm_tensorflow
Image mapping using the LDDMM algorithm, implemented in tensorflow
ImperialTissueCyte
Resources for tissue imaging at Imperial College London.
openpiv-ipywidget
Jupyter widget GUI for OpenPIV
remote_refocus
A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://amsikking.github.io/remote_refocus/
SPADsim
SPAD Simulation
swc-hg-novice
Software Carpentry introduction to Mercurial for novices.