octopi-research
for sharing design, software and firmware for the general purpose octopi (open configurable high-throughput imaging platform) designed for research use. The version designed for disease diagnosis is undergoing design upgrade and will be released in a different repo. reference: https://www.biorxiv.org/content/10.1101/684423v1
tracking is developed with Krishnamurthy et al.: https://www.biorxiv.org/content/10.1101/610246v1
The latest software code was developed with inspiration from https://github.com/jonatanalvelid/Tempesta-RedSTED
Getting started
The microscope is controled by an Arduino Due and a computer running Ubuntu. The computer can be one of the Nvidia Jetson platforms (e.g. Jetson Nano, Jetson Xavier NX) or a regular laptop/workstation. Instructions for using the firmware and software can be found in the respective folders.