vruetten / cell_detection

simple cell detection pipeline using OpenCV

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cell detection pipeline

first attempt at simple cell detection pipeline using OpenCV

Installing

  • to come...

Running

See the examples directory. (coming soon)

demo code

simple demo

raw image initial mask

After applying some more simple morphological operators (thresholding/erosion etc)

contours detected center localisation

References

Author

ginny rutten

About

simple cell detection pipeline using OpenCV


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Language:Jupyter Notebook 99.4%Language:Python 0.6%