Vratin Srivastava's repositories
graphpocket
Predicting protein binding pocket similarity using graph neural networks.
vlr-hw1
Classification and Detection
Language:Python000
PromoterStrength
Model to predict promoter strength using embeddings generated from a DNA large language model.
Language:Jupyter Notebook000
ProDy-website
ProDy Website
Language:Jupyter NotebookMIT000
ProDy
A Python Package for Protein Dynamics Analysis
Language:PythonNOASSERTION000
AsthmaClustering
Final project for 02-680 (Machine Learning for Scientists) at CMU. Implementation of algorithms to cluster genes based on asthma severity and implementation of an asthma severity classifier.
Language:Jupyter Notebook000
AnnoGenie
A bioinformatics pipeline for the de-novo annotation of genomes using NGS data from closely related species.
Language:Shell000
mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Language:PythonApache-2.0000