Dinghua Li's repositories
flat_hash_map
A very fast hashtable
GenomicConsensus
PacBio® variant and consensus caller (Quiver algorithm)
smartdenovo
Ultra-fast de novo assembler using long noisy reads
SOAP3-dp
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.
fermi-lite
Standalone C library for assembling Illumina short reads in small regions
filterpy
Python Kalman filtering and optimal estimation library. Implements Kalman filter, particle filter, Extended Kalman filter, Unscented Kalman filter, g-h (alpha-beta), least squares, H Infinity, smoothers, and more. Has companion book 'Kalman and Bayesian Filters in Python'.
FP-COMP8503
Codes and files for the final project of COMP8503
gcc-4.9.2-boost-1.57
Bash script to install gcc-4.9.2 and boost-1.57 on CentOS 5.x, CentOS 6.x and Mac OS X. Languages: c++, c and go. Includes tcmalloc on linux.
kubernetes
Production-Grade Container Scheduling and Management
sparsehash-c11
Experimental C++11 version of sparsehash
zh-google-styleguide
Google 开源项目风格指南 (中文版)