Vlad Savelyev's repositories
bed_annotation
Assign gene names to regions in a BED file
wdl-workflows
Configuration file templates to run WDL workflows with Cromwell
alphaTab
alphaTab is a cross platform music notation and guitar tablature rendering library.
awesome-nextflow
A curated list of nextflow based pipelines
deeplearning
Learning machine learning
guitartab
Transformer trained on alphaTex guitar tablatures
learn-rust
Learning Rust
llama_index
LlamaIndex (GPT Index) is a project that provides a central interface to connect your LLM's with external data.
lz-string-python
lz-string for python 2/3
lzstring-feedstock
A conda-smithy repository for lzstring.
MultiQC_NGI
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
nextflow-workflow-catalog
A statically generated catalog of available Nextflow workflows
plotly.js
Open-source JavaScript charting library behind Plotly and Dash
rich
Rich is a Python library for rich text and beautiful formatting in the terminal.
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
scribepod
Some of the scripts I use for scribepod @ https://scribepod.substack.com/, an automated AI podcast
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
text-generation-inference
Large Language Model Text Generation Inference
tools
Python package with helper tools for the nf-core community.
visual-chatgpt
Official repo for the paper: Visual ChatGPT: Talking, Drawing and Editing with Visual Foundation Models