This repository contains some code explaining how to set DESeq2 contrasts using the model matrix of our design.
This approach is general and so works for a range of experimental designs, even more complex ones.
If something doesn't look correct, please let me know (open an issue). I would love to learn if I've gotten something wrong!
Using these materials
Feel free to use and adapt these materials to your own needs. If you do, please give attribution to: Hugo Tavares (University of Cambridge, Bioinformatics Training Facility)