A modern approach to analyze data from a Genome Wide Association Studies (GWAS)
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Start Julia, press ] to enter package manager mode, and type the following (after pkg>):
(v1.0) pkg> add https://github.com/OpenMendel/SnpArrays.jl
(v1.0) pkg> add https://github.com/biona001/MendelIHT.jl
The order of installation is important!
A preprint of our paper is available on bioRxiv. If you use MendelIHT.jl, please cite:
Benjamin B. Chu, Kevin L. Keys, Janet S. Sinsheimer, and Kenneth Lange. Multivariate GWAS: Generalized Linear Models, Prior Weights, and Double Sparsity. bioRxiv doi:10.1101/697755