vivekruhela

pytorch-lightning

Pretrain, finetune ANY AI model of ANY size on multiple GPUs, TPUs with zero code changes.

GNNPapers

Must-read papers on graph neural networks (GNN)

dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

ignite

High-level library to help with training and evaluating neural networks in PyTorch flexibly and transparently.

benchmarking-gnns

Repository for benchmarking graph neural networks

deeplearning-biology

A list of deep learning implementations in biology

dask-tutorial

Dask tutorial

deep-learning-notes

Experiments with Deep Learning

GeneticAlgorithmsWithPython

source code from the book Genetic Algorithms with Python by Clinton Sheppard

scRNA-seq_notes

A list of scRNA-seq analysis tools

ThinkJulia.jl

Port of the book Think Python to the Julia programming language

TCR-BCR-seq-analysis

T/B cell receptor sequencing analysis notes

scCustomize

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

fishplot

Create timecourse "fish plots" that show changes in the clonal architecture of tumors

Genomic-Interactive-Visualization-Engine

Genomic Interactive Visualization Engine

MathProgBase.jl

DEPRECATED: Solver-independent functions (i.e. linprog and mixintprog) and low-level interface for Mathematical Programming

ulcerative_colitis

piPipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School

radia

RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

MarketCycles.jl

Digital Signal Processing Indicators For Market Data.

vcf_stuff

📊Evaluating, filtering, comparing, and visualising VCF

neural-systems-modeling-exercises

Exercises of the book Tutorial on Neural Systems Modeling by Thomas J. Anastasio

jupyter-notebook-to-ebook

Transform Jupyter Notebook to a beautifully formated Ebook

scRNAseqWorkflow

Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz

ML-Reading-Group

Collection of talks given in the ML reading group@IIITD

libsbgn-python

Python bindings for libsbgn

GRRANN

EpistasisDetection

fishplot

Create timecourse "fish plots" that show changes in the clonal architecture of tumors

tellurium

Python Environment for Modeling and Simulating Biological Systems