vivekkohar

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Vivek Kohar's starred repositories

algorithm-archive

A collaborative book on algorithms

Language:PythonMIT233100

Algorithms

Several algorithms and data structures implemented in C++ by me (credited to others where necessary).

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TikZ

Complete collection of my PGF/TikZ figures.

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system-design-primer

Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.

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tech-interview-handbook

💯 Curated coding interview preparation materials for busy software engineers

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destiny

R package for single cell and other data analysis using diffusion maps

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digest

R package to create compact hash digests of R objects

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deseq2_or_edger

DESeq2 or edgeR

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jax-single-cell

A curated space for the JAX Single Cell Community of Practice

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genewalk

GeneWalk identifies relevant gene functions for a biological context using network representation learning

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future

:rocket: R package: future: Unified Parallel and Distributed Processing in R for Everyone

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data.table

R's data.table package extends data.frame:

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nonlinearTseries

Nonlinear time series analysis in R

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Chaos_ReservoirComputing

A very basic implementation of Reservoir that can learn chaotic systems

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hamiltonian-nn

Code for our paper "Hamiltonian Neural Networks"

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deeplearning-models

A collection of various deep learning architectures, models, and tips

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sundials

Official development repository for SUNDIALS - a SUite of Nonlinear and DIfferential/ALgebraic equation Solvers. Pull requests are welcome for bug fixes and minor changes.

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SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

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sRACIPE

stochastic analysis for Random Circuit Perturbation

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seurat

R toolkit for single cell genomics

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tensorqtl

Ultrafast GPU-enabled QTL mapper

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umap

Uniform Manifold Approximation and Projection - R package

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pagoda2

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

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torchdiffeq

Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.

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CancerInSilico

An R package for running cell-based models

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rust-pseudoaligner

Single-Cell RNA-seq pseudo-aligner

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Contributions

Contribute Packages to Bioconductor

LOLAweb

An interactive Shiny web application for genomic interval enrichment analysis using LOLA.

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jsonify

R package to convert R objects to JSON

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r_docker_hello

A simple hello world R-docker example

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