visionpathology's repositories
meditorch
A PyTorch package for biomedical datasets processing, development and testing.
pathml
Tools for computational pathology
python-wsi-preprocessing
Python Whole Slide Image Preprocessing
tiatoolbox
Computational Pathology Toolbox developed by TIA Lab
TOAD
AI-based pathology predicts origins for cancers of unknown primary - Nature
torchio
Medical image preprocessing and augmentation toolkit for deep learning
tutorials
MONAI Tutorials
wsi-preprocessing
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
wsi-preprocessing-sos-workflow
A pipeline to preprocess whole-slide images (WSI) towards deep learning
wsi-tile-cleanup
Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning
deep-histopath
A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge
DeepPATH
Classification of Lung cancer slide images using deep-learning
ec2-setup-sos-workflow
Automatic setup of EC2 instances and EBS volumes via SoS Workflow
histocartography
Histocartography is a framework bringing together AI and Digital Pathology
histolab
Library for Digital Pathology Image Processing
interpretAI_DigiPath
Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
kaggle_sandbox
a starting point for Kaggle attempt :]
medical-imaging
ML-based medical imaging using Azure