viperML / bench-in-situ

bench-in-situ

To clone the project

git clone --recurse-submodules https://github.com/Maison-de-la-Simulation/bench-in-situ.git

or

git clone https://github.com/Maison-de-la-Simulation/bench-in-situ.git 
git submodule init
git submodule update

Modules needed (on Ruche)

module load gcc/11.2.0/gcc-4.8.5
module load openmpi/4.1.1/gcc-11.2.0
module load cuda/11.7.0/gcc-11.2.0
module load cmake/3.21.4/gcc-11.2.0 

Modules needed (on Jean-Zay)

module load cmake/3.21.3
module load intel-compilers/19.0.4
module load intel-mpi/2019.4

To build PDI

cmake -DCMAKE_INSTALL_PREFIX=$PWD/../../install_pdi -DUSE_HDF5=EMBEDDED -DBUILD_HDF5_PARALLEL=ON  -DUSE_yaml=EMBEDDED -DUSE_paraconf=EMBEDDED -DBUILD_SHARED_LIBS=ON -DBUILD_FORTRAN=OFF -DBUILD_BENCHMARKING=OFF -DBUILD_SET_VALUE_PLUGIN=OFF -DBUILD_TESTING=OFF -DBUILD_DECL_NETCDF_PLUGIN=OFF -DBUILD_USER_CODE_PLUGIN=ON ..
make -j 8
make install
source $PWD/../../install_pdi/share/pdi/env.sh

To build bench

mkdir build && cd build
cmake -DSESSION=MPI_SESSION -DKokkos_ENABLE_OPENMP=ON -DEuler_ENABLE_PDI=ON ..
make -j 4

To run bench

./main ../setup.ini ../io_chkpt.yml

Offline Installation

Offline Installation

• Download the Python environment on the online machine : ./scripts/offline_python_env_download.sh
• Copy the whole repo on the offline machine
• Source the env file and ruche env file : source scripts/env.sh && source envs/PLATFORM/modules.env
• unzip the deisa_.tar.gz file according to the Python version used on the offline machine : tar -xzvf working_dir/deisa_deps_py${PYTHON_VERSION}.tar.gz -C ${WORKING_DIR}
• Install the Python environment on the offline machine : ./scripts/offline_python_env_setup.sh
• Install PDI : ./scripts/build_pdi.sh
• Install ARK-MHD : ./scripts/build_simulation.sh