Vini Salazar's repositories
sparkmer-count
k-mer counting with Spark ✨
awesome-microbiome-stats
🧮🦠 A curated list of papers on microbiome statistical analysis and tools.
neocrawler
🕷 A small crawling project to obtain type SSU accession numbers from http://bacterio.net
qiime2utils
Utility scripts for Qiime 2
Awesome-CV
Awesome CV is LaTeX template for your outstanding job application
BioEnergia-Lagoa
Files related to the BioEnergia Lagoa scientific project.
CheckM
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
CompareM
A toolbox for comparative genomics.
complex_networks
A repository for my work in the Complex Networks course at COPPE
CONCOCT
Clustering cONtigs with COverage and ComposiTion
dfa_lib_python
Python API for the DfAnalyzer application
docker-alpine-miniconda3
The smallest Docker image with Miniconda3 (Python 3.7) (~143MB)
fcoex
The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is based on the CEMiTool package.
fisa-vim-config
my vim configuration (lot of python, autocompletition, fuzzy finder, debugger, ...)
GToTree
A user-friendly workflow for phylogenomics
infomap
Multi-level network clustering based on the Map Equation
metabolisHMM
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
MetaSanity
Pipeline for major biological analyses.
PopCOGenT
Microbial Populations as Clusters Of Gene Transfer
PPanGGOLiN
Build a partitioned pan-genome graph from annotated genomes and gene families
ptbR
Pacotinho que tem funções que embrulham funções do R, só que em português
seqstats
Quick summary statistics on fasta/fastq(.gz) files
SynechococcusPreprint
Synechococcus genomic taxonomy 🌱🧬
tex_resume
Software developer resume in Latex
tutorial_git
No budget science
uom_latex_thesis
LaTeX template for a PhD Thesis, prefilled with requirements by the Graduate School of Research at the University of Melbourne (Work in progress!)
xmeeting2019
🧬📁 Files for my X-Meeting 2019 poster