vincent-van-hoef's repositories
duckdb-in-ojs
use duckdb in quarto ojs blocks
epi_course_2021
Material for Epi 2021 Course
awesome-public-datasets
A topic-centric list of HQ open datasets.
blog
Useful and other things.
d3
Sandbox for d3 visualization
deepvariant
Google's DeepVariant variant caller as a Nextflow pipeline
DockerTest
Test for docker shiny app on digital ocean
dotbash
Bash profiles and terminal settings.
gitpod_sandbox
Repo to play around with gitpod
GO
Analysis of GO enrichment
GrandChallenge_QC
Set of scripts to check relatedness Grand Challenge samples.
mixOmics
Development repository for the Bioconductor package 'mixOmics '
myFunctions
Collection of custom R functions
project_5507
Single-Cell analysis Mast Cells
project_template
Template for short term support projects
report_template
Template for quarto reporting in SMS projects.
reportjs
Helper functions for improved html reports
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
RNAseqAnalysis
What the Package Does (One Line, Title Case)
sandbox
NextflowTests
singler
Description of SingleR annotation workflow on Seurat objects
UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets