vganapati / multi-layer-born

Multi-layer Born scattering model for 3D phase contrast optical diffraction tomography

Please cite the following paper when using the code:

Multi-layer Born multiple-scattering model for 3D phase microscopy

Michael Chen, David Ren, Hsiou-Yuan Liu, Shwetadwip Chowdhury, and Laura Waller

Contents

1. Usage
2. Data
3. Resources
4. Updates

Usage

0. Install required dependencies Arrayfire and contexttimer.
1. Clone this repo.
2. Run sample script for simulated measurements and reconstructions.

Data

Sample data is prepared here.

Resources

0. MATLAB implementation of the multi-slice method.

Updates

08/27/2020:

1. Added first version of code to repo. Same as that used in the paper.