Beast code in Giters

Francesco's repositories

FRC_align

Computes FRC from SAM/BAM file and not from afg files

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NouGAT

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TIDDIT

FindTranslocations

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ERNE

Extended Randomized Numerical Aligner

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joint_variant_calling

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qaTools

Some more QA

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BestPracticesWorkshop

Repository for the workshop "Best practices on development"

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flowcell_parser

Collection of python scripts to parse Illumina Xten output

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genomics-status

Tornado server for tracking samples at NGI Stockholm

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hugin

Status monitor

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

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MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

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ngi_pipeline

Code driving the production pipeline at SciLifeLab (not yet in production)

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post_join_calling

Tentative repo in order to collect NextFLow tools to perform QC on the result of join calling

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scilifelab

Misc code snippets for Science For Life Laboratory

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standalone_scripts

Repository to store standalone scripts that do not belong to any bigger package or repository

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TACA

Tool for the Automation of Cleanup and Analyses

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taca-ngi-pipeline

A TACA plugin adding functionality relevant for the ngi_pipeline

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technical-training

Material for technical training workshops hosted by SSC

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wgs-structvar

Whole Genome Sequenceing Structural Variation Pipelines

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