Beast code in Giters

Charles Vejnar's starred repositories

Genomics pipelines

Language:PythonMPL-2.01100

A simple, flexible script for versioned backups using btrfs and rsync

Language:ShellGPL-3.07200

Knead your sequencing reads before baking: clips, demultiplexes, filters and trims reads

Language:GoMPL-2.0300

JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage

Language:PythonMPL-2.01300

Makes aiohttp server autoreload on source code change

Language:PythonApache-2.02300

Failing Disk Reporter (FDR): Get a report when a drive (HDD or SDD) is failing via Matrix or Slack. MIRROR

Language:GoMPL-2.0100

Versatile databases for genomic sequencing and lab management

Language:PythonMPL-2.0300

Counts and profiles sequencing reads within genes, chromosomes or constructs.

Language:GoMPL-2.0700

Small utility functions for Python: logging, parallel tasks, zstd

Language:PythonMPL-2.0100

Toy npm-like package installer in Rust. Reads package.json; installs packages. (Not yet usable for real work.)

Language:RustApache-2.0900

A fast PostgreSQL Database Client Library for Python/asyncio.

Language:PythonApache-2.0688900

Let's Encrypt/ACME client and library written in Go

Language:GoMIT788800

Optional tools to help manage data in a mergerfs pool

Language:PythonISC38200

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

MIT22900

matplotlib: plotting with Python

Language:Python2001200