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# Multi-HIT

stevenweaver opened this issue · comments

commented

Multi-HIT

HyPhy FitMultiModel Page:
http://hyphy.org/methods/other/FitMultiModel/

  • The first question may be phrased a little weird?

    • It says “What biological question is the method designed to answer?”
    • Should it say instead, “What is the biological question that the method was designed to answer?”
    • Then the answer is “Does a data set have evidence of multiple simultaneous hits (MH) and to what (exitent: there is a typo)?”
    • In the answer, maybe it is a good idea to include a short description of what multiple simultaneous hits are.

  • Another question says, “What is the statistical procedure and statistical test is used to establish significance for this method?”

    • Should it say instead, “What are the statistical procedure and (the) statistical test (that) is used to establish significance for this method?”

  • For the parameter table: the omega row mentions GDD distribution. Brief description or simply stating what it stands for could be helpful.

Datamonkey Multi-HIT Page:
http://datamonkey.org/multihit

  • It would be nice to include descriptions of Triple Islands and Rate Classes on the page itself instead of hovering description or indicate somewhere that if we hover over the words, the description shows.

    • I know that it has cleaner look without the description, but as a user, maybe it is more helpful to see the info.

  • Since multi-hit is a complex program, it would be nice to link above HyPhy FitMultiModel Page on this page so that people don’t need to look for the information.

Datamonkey Multi-HIT Results Summary Page:

Data: HIV RT
Default parameters, rate classes, no triple islands
http://datamonkey.org/multihit/5ecf01d4d49cd511eec76b1b

  • When I click “Export” and hover over different options, the green color block is not fully coloring the row. It is not important but just thought that it would be nicer to have full row colored.

  • The left-hand side tab (that has options for summary, site plot, table, and substitution plot) is too close together with the bar that divides the actual results page.

letter_close_to_bar

  • Similar to Contrast-FEL, the “Copied!” icon does not have the hovering description. It shows “Copied!” after it is clicked.

  • Also, the copied message does not have the actual content. It has “[object Object]”.

  • When I hover over the Likelihood Test Results boxes, I get a line in the middle of the boxes. Just FYI.

  • For the Model Test Statistics Per Site Plot, maybe it would be nice to have some info on the Evidence Ratios vs Site Log Likelihood selections.

  • When I export Model Test Statistics Per Site Table, in the exported CSV file, the table's title row is a bit weird.

    • Example: <i class="fas fa-dice-three fa-2x"></i> vs. <i class="fas fa-dice-two fa-2x"></i>" shows up.
    • It is supposed to be 3H vs 2H

  • When I hover over the dice icons in the table, I get 2 hovering description boxes, one in black and the other one in white.

  • When I export the circle graph, the exported image does not include the legend information even after I check for the legend.

Originally posted by @stellaparadis in #291 (comment)