veg / datamonkey-js

Datamonkey - Run state-of-the-art statistical models through the comfort of your browser

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Restore FASTA features

stephenshank opened this issue · comments

FASTA features such as:

  • the option to view MSAs
  • the BUSTED tree/alignment widget

are unavailable on datamonkey-js 1.5.2. This is perhaps related to changes in HyPhy vision's logic for handling the fasta prop, i.e. :

veg/hyphy-vision@e647c7d#diff-9c152f8eefaf7dc40462a0e9f8d3b9f1

but I've yet to definitively confirm this.

Dear @stephenshank,

If I recall correctly, I made this change because including the msa in the results does not follow the hyphy results schema, and requires data munging in order to make the view work outside of datamonkey, which is undesirable.

If you work with hyphy-vision directly, I can make the necessary changes to datamonkey-js when it comes time for release.

Thanks for bringing this issue to attention.

Best,
Steven

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