vedatonuryilmaz

Rust

All Algorithms implemented in Rust

tigerbeetle

The financial transactions database designed for mission critical safety and performance.

marimo

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

ibis

the portable Python dataframe library

matmulfreellm

Implementation for MatMul-free LM.

jupysql

Better SQL in Jupyter. 📊

lonboard

A Python library for fast, interactive geospatial vector data visualization in Jupyter.

ipydatagrid

Fast Datagrid widget for the Jupyter Notebook and JupyterLab

pyranges

Performant Pythonic GenomicRanges

figeno

Tool for plotting sequencing data along genomic coordinates.

pyobsplot

Observable Plot in Jupyter notebooks and Quarto documents

zarrs

A rust library for the Zarr storage format for multidimensional arrays and metadata

arro3

A minimal Python library for Apache Arrow, connecting to the Rust arrow crate

SCOT

Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

simba

SIMBA: SIngle-cell eMBedding Along with features

chromoformer

The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)

TFEA

Transcription Factor Enrichment Analysis

scipy-2024-anywidget

genomic-features

Genomic Features in Python from BioConductor's AnnotationHub

deGeco

hippollm

LLM Memory system with a graph-vector database

scGrapHiC

A graph deconvolution approach to predict Hi-C contact map from pseudo-bulk scRNA-seq.

Bavisitter

[VIS 2024] Integrating Design Guidelines into Large Language Models for Visualization Authoring

ipydeck

Yet another Jupyter widget for deck.gl

TrajAtlas

llama-cli-cwl

CTCF-Deep-Learning

jbar

Interactive barcharts for Jupyter

SCOOTR

Single-cell CO-Optimal TRansport for jointly aligning cells and genomic features of single-cell multi-omic datasets

wasm_gnn