vdplasthijs / zf-rbm

Code to accompany Van der Plas*, Tubiana* et al., 2023, eLife

Code for Van der Plas*, Tubiana* and colleagues, 2023 eLife

Source:

https://elifesciences.org/articles/83139

and former bioRxiv preprint:

https://www.biorxiv.org/content/10.1101/2021.11.09.467900v1

We welcome you to reuse this code, and ask you to please cite our eLife article if you do.

Instructions:

• All figures were generated in whole by notebooks in /zf-rbm/figure_notebooks/. All other folders are just data for the notebooks and modules figure_notebooks/ or archived code.
• The package versions are documented in /zf-rbm/zf-rbm-py37.yml.
• Some computing-intensive code is in another repo, vdplasthijs/dnp-code/ -- in particular calculation of model stats vs experimental stats of Fig 2, and some cRBM-related stuff.
• The cRBM code is extensively documented including tutorials in the repo https://github.com/jertubiana/PGM, and described in detail in our elife paper.
• Data is available at https://gin.g-node.org/vdplasthijs/cRBM_zebrafish_spontaneous_data