Vic's repositories
barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
bedtools2
bedtools - the swiss army knife for genome arithmetic
BioMarkovChains.jl
Representing biological sequences as Markov chains
CopyNumberPlots
R package to create plots representing copy number data using karyoploteR
django-rest-framework
Web APIs for Django.
ESPAltherma
Monitor your Daikin Altherma / ROTEX heat pump with ESP32
Exomiser
A Tool to Annotate and Prioritize Exome Variants
funannotate
Eukaryotic Genome Annotation Pipeline
GeneFinder.jl
A Gene Finder framework for Julia.
GenomicMaps.jl
Julia package for visualising genomic data
jbrowse-jupyter
Jupyter Notebooks extension for showing JBrowse views
karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
orfipy
Fast and flexible ORF finder
pipetaxon
PipeTaxon exposes the ncbi taxonomy database as a REST API.
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
python-client
Python client library for Core API.
qiime2
Official repository for the QIIME 2 framework.
seqtk
Toolkit for processing sequences in FASTA/Q formats
SpliceV
Visualize coverage, canonical, and backsplice junctions.
stringdb-beacon
Knowledge Beacon Wrapper for the StringDb resource (https://string-db.org/)
tagseq-qiime2-snakemake
Pipeline to run qiime2 with snakemake
templated-docs
Generate PDF, MS Word and Excel documents from templates in Django
viroverse
a platform for the collection, storage, retrieval, and analysis of experimental data for laboratory workflows