vdauwera

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

ashg20

Resources for Terra tutorial for ASHG 2020 workshop

demos

Workflows used for teaching and demonstration purposes

GATK-for-Microbes

genomics-in-the-cloud

Source code and related materials for the O'Reilly book

home

newsletter

repo for OBF community newsletter updates

nf-training-intro

parsedown

Better Markdown Parser in PHP

parsedown-extra

Better Markdown Extra Parser in PHP

pipelines-api-examples

Examples for the Google Genomics Pipelines API.

product-process

tool-registry-schemas

APIs for discovering genomics tools, their metadata and their containers

training

Nextflow training material

vdauwera.github.io

Build a Jekyll blog in minutes, without touching the command line.

vrs-python

GA4GH Variation Representation Python Implementation

warp

WDL Analysis Research Pipelines — GVdA

wdl

Workflow Description Language - Specification and Implementations

wdltool