Beast code in Giters

vbaillet's starred repositories

edamontology

EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and data life-cycle in biosciences, and in other research and science-based applications.

Language:ShellCC-BY-SA-4.011700

ggdist

Visualizations of distributions and uncertainty

Language:RGPL-3.081700

FastQ-Screen

Detecting contamination in NGS data and multi-species analysis

Language:HTMLGPL-3.05900

Genrich

Detecting sites of genomic enrichment

Language:CMIT18400

tfmodisco

TF MOtif Discovery from Importance SCOres

Language:Jupyter NotebookMIT12000

bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

Language:PythonMIT22900

popgen-notes

Population genetics notes

Language:PostScriptMIT62600

Umi-Grinder

The use of UMIs for sequencing becomes more and more frequently used so we need to take them into consideration when deduplicating data aligning to the same positions

Language:Perl600

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

MIT303700

gridss

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Language:JavaNOASSERTION24900

QTG_Seq

Language:RGPL-3.02000

Gene_Set_Enrichment_Pipeline

Pipeline used to test for an enrichment of sweeps in a set of genes while controlling for confounding factors and with the option to run a full FDR analysis by using randomized genomes. See the available manual.

Language:Perl1800

flair

Full-Length Alternative Isoform analysis of RNA

Language:PythonNOASSERTION20300

Module-9-Open-Educational-Resources

Module 9 : Open Educational Resources

CC0-1.01200

Module-4-Open-Research-Data

Module 4: Open Research Data

Language:HTMLCC0-1.01200

Module-1-Open-Principles

Module 1: Open Principles

Language:HTMLCC0-1.03700

Module-5-Open-Research-Software-and-Open-Source

Module 5: Open Research Software and Open Source

Language:HTMLMIT7200

HumanIdiogramLibrary

Resource of human chromosome schematics & images

NOASSERTION8400

GRFP

Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecology and Evolutionary Biology.

6700

fiveMinuteStats

A repo of short "vignettes" illustrating statistical concepts

Language:HTMLNOASSERTION29100

hugo-blox-builder

🚨 GROW YOUR AUDIENCE WITH HUGOBLOX! 🚀 HugoBlox is an easy, fast no-code website builder for researchers, entrepreneurs, data scientists, and developers. Build stunning sites in minutes. 适合研究人员、企业家、数据科学家和开发者的简单快速无代码网站构建器。用拖放功能、可定制模板和内置SEO工具快速创建精美网站！

Language:HTMLMIT801500