vavrusa / seqalpha

G-Quadruplex prediction & classification

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Quadruplex family classification

Tools for recognition of the G-quadruplex structures in the PDB models and a classification into GQ families based on the topology. As a complement, the library also supports a prediction of a GQ family from known GQ-forming sequences using a novel predictor.

The software is divided into the library and commandline tools, and the web interface. The README for both parts is located in the respective subdirectories.

Library and tools

This can be found in the quadclass subdirectory.

Web interface

A web interface written in Python and Flask for convenient integration with the existing sequence analysis workflow. It can be found in the web subdirectory.

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G-Quadruplex prediction & classification

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