vaulot

qs

Quick serialization of R objects

SCRIPTS

A set of Python and Perl scripts for comparative genomics

marine-Synechococcus-metaB

BioticInteraction

trophyProtists

Accompanying code for the data paper "A dataset on trophic modes of aquatic protists" submitted to the Biodiversity Data Journal. This repository contains the code to create the plots and the match the dataset against WoRMS.

CoNekT

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

FluxNet_v1.0

FluxNet version 1.0

random

Random scripts to deal with common and simple file manipulations in bioinformatics

Automatic-Water-Sampler

Files relating to the building of the refrigerated automatic water sampler for phytoplankton culture sampling.

Catalyst_Biogeography

Repository for files and scripts for metadata and sequence data analysis and plotting for NZ EEZ DNA metab paper

micropolar_protists_datapaper

rocker-versioned2

Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.

code_club

malina_data_paper

Repository for the data paper of the MALINA oceanographic cruise.

bacteria-archaea-traits

A synthesis of bacterial and archaeal phenotypic trait data

TAN1810_C14

C14 data

Phyto_NAAMES_2019

This repository contains supplementary documents and code for the manuscript: "Small Phytoplankton Dominate Western North Atlantic Biomass"

predictTrophicMode

Mastering-OpenCV-4-with-Python

Mastering OpenCV 4 with Python, published by Packt

EcolUtils

Utilities for community ecology analysis

Blanes_Temporal_Series

Repository for Giner et al. (2018), 'Quantifying long-term recurrence in planktonic microbial eukaryotes'

designing_ggplots

Workshop materials for "Designing ggplots"

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

cheatsheets

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

swarm

A robust and fast clustering method for amplicon-based studies

atlas

ATLAS - Three commands to start analyzing your metagenome data

Extract_microeukrRNA_from_metagenome

Extracting 18S/28S rRNA gene signatures from metagenomic data

ggtext

Improved text rendering support for ggplot2

eukGeoBlast

greenedge-icecamp-data-paper

Data paper for the Green Edge ice camps