vanvalenlab's repositories
deepcell-tf
Deep Learning Library for Single Cell Analysis
intro-to-deepcell
An introduction to deepcell and deep learning
deepcell-label
Cloud-based data annotation tools for biological images
kiosk-console
DeepCell Kiosk Distribution for Kubernetes on GKE and AWS
deepcell-tracking
Track cells and build cell lineages
publication-figures
Scripts capable of re-creating figures from Van Valen Lab publications
deepcell-spots
Deep Learning Library for Spot Detection
deepcell-toolbox
Data processing tools associated with deepcell
deepcell-applications
Run DeepCell Applications
tcga-utils
Utilities for handling whole slide images from the The Cancer Genome Atlas (TCGA) Dataset
kiosk-imageJ-plugin
An ImageJ Plugin for interacting with the DeepCell Kiosk
kiosk-client
HTTP client utilities for interacting with the Deepcell kiosk
deepcell-label-processing
Scripts for processing and converting raw data to label format and creating DCL projects
deepcell-retinamask
RetinaNet and RetinaMask models for object detection based on TensorFlow and DeepCell-tf.
kiosk-frontend
DeepCell web application built using NodeJS, Express, React, and Webpack.
kiosk-redis-consumer
Consume the Kiosk's Redis Events
kiosk-tf-serving
TensorFlow Serving with models hosted in the cloud
deepcell-datasets
React App for hosting curated datasets.
deepcell-label-utils
Utilities for spatial cell labels
deepcelltypes-demo-08-2023
Executable demo of deepcelltypes model pipeline
hubmap-mean-expression-example
Minimal analysis example of data from cytokit+sprm pipeline output
kiosk-autoscaler
Automatically and efficiently scale Kubernetes GPU resources
kiosk-bucket-monitor
Monitors a cloud bucket and remove stale files.
kiosk-data-processing
DEPRECATED: gRPC API for pre- and post-processing data
kiosk-redis-janitor
Watches Redis and restarts any stalled jobs.