vanAmsterdam

lidc-binary-classification

This repository contains code to pre-process the LIDC-IDRI dataset of CT-scans with pulmonary nodules into a binary classification problem, easy to use for learning deep learning

elimbias

Code to reproduce results from Eliminating Biasing Signals in Lung Cancer Images for Prognosis Predictions with Deep Learning, van Amsterdam et al. 2019

causal-data-science-summerschool

Course website and materials for Causal Data Science Summerschool - University Medical Center Utrecht

batchgenerators

A framework for data augmentation for 2D and 3D image classification and segmentation

binarymcm

Binary marginally constrained models - code to reproduce experiments in "Conditional average treatment effect estimation with marginally constrained models"

bodycomp-survival-public

Repository with code for "The association between muscle quantity and overall survival depends on radiodensity: a cohort study in non-small cell lung cancer patients"

controlling-for-biasing-signals-in-images

Archival repository for replicating published results

COVID-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

dotfiles

Get started with your own dotfiles.

Fixup

A Re-implementation of Fixed-update Initialization

flax

iResNet

Paper by Miyato et al. https://openreview.net/forum?id=B1QRgziT-

jaxopt

Hardware accelerated, batchable and differentiable optimizers in JAX.

kiara-Master-Thesis-ADS

markdown-cv

academic CV in rmarkdown

numpyro

Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

offsetmodels

penalized

:exclamation: This is a read-only mirror of the CRAN R package repository. penalized — L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model

pretrainedresnet3d

3D ResNets for Action Recognition (CVPR 2018)

protect

Implementation of PROTECT: proxy based individual treatment effect modeling in cancer

pycox

Survival analysis with PyTorch

pytorch-lightning

The lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate

pytorch-lightning-conference-seed

Pytorch Lightning code guideline for conferences

robvis

:heavy_check_mark: :grey_question: :x: A package to quickly visualise risk-of-bias assessment results

selectiveisolation

Repository for modeling different forms of (selective) isolation for the COVID-19 outbreak

smcfcs

R package implementing Substantive Model Compatible Fully Conditional Specification Multiple Imputation

survival

Survival package for R

synthea

Synthetic Patient Population Simulator

vanamsterdam.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

vim-snippets

vim-snipmate default snippets (Previously snipmate-snippets)