Manoj Kumar Valluru's repositories
BoxPlotR.shiny
shiny application to generate box plots with R
cgcloud
Image and VM management for Jenkins, Spark and Mesos clusters in EC2
clipseqtools
A suite for the analysis of CLIP-Seq datasets.
Deeplearning-digital-pathology
Full package for applying deep learning to virtual slides.
design
OME Design proposals
fastq-pair
Match up paired end fastq files quickly and efficiently.
gatk3-4-rnaseq-germline-snps-indels
Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools
JNB_reproducible
đź““Notebook materials for the RSE conference workshop (2017)
lollipops
Lollipop-style mutation diagrams for annotating genetic variations.
morpheus.js
JavaScript matrix visualization and analysis
piranha
Piranha is a peak-caller for CLIP- and RIP-seq data
plotly.js
The open source JavaScript graphing library that powers plotly
pydock_tutorial
PyDock Tutorial
rnaseq
Code for RNA-seq analysis and visualization.
RNAseq-R
RNAseq analysis in R workshop
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
rpackages
R package development - the Leek group way!
Shef_CodeFirst_Python
Course materials for the Advanced Python course in Sheffield 🤖💪🏼👩🏻‍💻
ShortStack
ShortStack: Comprehensive annotation and quantification of small RNA genes
SlicerPathology
3D Slicer extension for Pathology segmentation tools
SlideSeg
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
smrnaseq
Analysis pipeline for small-RNA sequencing data.
starchip
Detection of Circular RNA and Fusions from RNA-Seq
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
WGCNA
:exclamation: This is a read-only mirror of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis. Homepage: http://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/
xenaPython
Python API for Xena Hub