valleema's repositories

fast5mod

Extract modifed base call information from Guppy Fast5 files.

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gatk4-GenotypeGVCFs-nf

Joint calling of gVCF, following GATK4 Best Practices

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rnafusion

RNA-seq analysis pipeline for detection gene-fusions

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gatk4-DataPreProcessing-nf

Nextflow pipeline for pre-process BAM(s) with hg38 and GATK4

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nextflow

A DSL for data-driven computational pipelines

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