Andres Martinez's repositories
Adipose-Partitioning
R code to determine the fraction of individual PCBs in 24-well plate setup experiments. This code is part of Project 2 of the ISRP (https://iowasuperfund.uiowa.edu/).
Individual-PCB-Flux-Lake-Michigan
R code to calculate the air-water flux of individual PCB congeners from southern Lake Michigan from air and water active samples from September 2010. This is part of Project 4 of the ISRP (https://iowasuperfund.uiowa.edu/).
Metab-Partitioning
R code to determine the fraction of individual PCBs in 24-well plate setup experiments. This code is part of Project 1 of the ISRP (https://iowasuperfund.uiowa.edu/).
Monte-Carlo-Fugacity-ratios
New version of codes to calculate individual PCB fugacity ratios from IHSC, where data are available from Pangaea. This is part of Project 4 of the ISRP (https://iowasuperfund.uiowa.edu/).
PCB-flux-calculations
New version of codes to calculate individual PCB air-water fluxes from IHSC, where data are available from Pangaea. This is part of Project 4 of the ISRP (https://iowasuperfund.uiowa.edu/).
PCB-Flux-Lake-Michigan
R code to calculate the air-water flux of total PCB congeners from southern Lake Michigan from air and water active samples from September 2010. This is part of Project 4 of the ISRP (https://iowasuperfund.uiowa.edu/).
PCBWaterProject
R codes developed for PCB water concentrations in USA. Codes describe how to create maps and figures, as well as all the statistical analyses. All data are available and download from Pangaea. This is part of Project 4 of the ISRP (https://iowasuperfund.uiowa.edu
PCBWaterProjectV02
R codes developed for PCB water concentrations in USA. Codes describe how to create maps and figures, as well as all the statistical analyses. All data are available and download from Pangaea. This is part of Project 4 of the ISRP (https://iowasuperfund.uiowa.edu
PHPCBFluxes
R codes use to estimate PCB fluxes from Portland Harbor. Codes include a Monte Carlo simulation. This is part of Aim 3, Project 4 of the ISRP (https://iowasuperfund.uiowa.edu/)Code to estimate PCB fluxes from PH water
R-codes-for-East-Chicago-PCB-soil-analysis
R codes developed for East Chicago PCB soil paper. Codes describe how to create the maps and figures (ECSoilFigures.R), as well as all the statistical analyses (ECSoilStatTest.R) performed in the paper. All data are available and download from Pangaea. This is part of Project 6 of the ISRP (https://iowasuperfund.uiowa.edu/)
PCB-Reactive-Transport-Model
The Polychlorinated Biphenyl (PCB) Reactive Transport Model produces simulations of congener-specific PCB concentration in the aqueous and gas phase of laboratory-scale bioreactors containing PCB-contaminated sediment slurry. The script uses experimental passive sampler measurements and a minimization of least squares procedure to fit congener-specific adsorption and desorption coefficients to the model. Finally, the model can simulate the reduction in volatile release of PCBs from sediment slurry to air resulting from the presence of an aerobic PCB-degrading microorganism with a known PCB biotransformation rate. This is part of Project 5 of the ISRP (https://iowasuperfund.uiowa.edu/)
PK-Sim
PK-Sim® is a comprehensive software tool for whole-body physiologically based pharmacokinetic modeling
R-codes-for-East-Chicago-soil-PCB-analysis
R codes developed for East Chicago PCB soil paper. Codes describe how to create the maps and figures (ECSoilFigures.R), as well as all the statistical analyses (ECSoilStatTest.R) performed in the paper. All data are available and download from Pangaea. This is part of Project 6 of the ISRP (https://iowasuperfund.uiowa.edu/)
Suite
Open Systems Pharmacology Suite Setup
WristBandProject
R codes used to calculate WB sampling rates for individual PCB congeners under static and rotating condition. This is part of Project 3 of the ISRP (https://iowasuperfund.uiowa.edu/)