vaalessi

whisper

Robust Speech Recognition via Large-Scale Weak Supervision

graphrag

A modular graph-based Retrieval-Augmented Generation (RAG) system

alphafold3-pytorch

Implementation of Alphafold 3 in Pytorch

unsloth

Finetune Llama 3.2, Mistral, Phi & Gemma LLMs 2-5x faster with 80% less memory

paperchat

PaperChat - cli, API and ChatGPT plugin to query arXiv's dataset

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

UniRep

UniRep model, usage, and examples.

NN-SVG

Publication-ready NN-architecture schematics.

huggingface.js

Utilities to use the Hugging Face Hub API

TheAlgorithms-Python

All Algorithms implemented in Python

Forta-Agents

ETH-Transaction-Graph

Dynamic graph of Ethereum transactions using Web3.js subscribe

Link-Predictability-using-VGAE

Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

code.mil

An experiment in open source at the Department of Defense.

pytorch-tutorial

PyTorch Tutorial for Deep Learning Researchers

practicalAI

A practical approach to learning machine learning.

jupyterlab-variableInspector

Variable Inspector extension for Jupyterlab

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

b575f19

UM DCMB BIOINF 575 Fall 2019 class repo

QoRTs

Quality of RNA-Seq Toolset

pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

PythonDataScienceHandbook

Python Data Science Handbook: full text in Jupyter Notebooks

CMPO

Cellular Microscopy Phenotype Ontology

basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

mediKanren

Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

SOCRAT

A Dynamic Web Toolbox for Interactive Data Processing, Analysis, and Visualization