bio-for-ever's repositories
bio-scripts
collection of scripts for bioinformatic analysis
Bioinfo_scripts
Misc scripts than can be useful for bioinformatics
BioinfUtil
Regularly used bioinformatics script for different purposes
bulk-HiC-analysis
bulk hic analysis code (bash & python)
Cancer_notes
A continually expanding collection of cancer genomics notes and data
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
CodeSpringLab
Collection of bioinformatics pipelines and scripts for Cold Spring Harbor Laboratory created by BSR (Bioinformatics shared resources)
custom_scripts
General repository with custom scripts for data processing, bioinformatic workflows and downstream analysis
fuc
Frequently used commands in bioinformatics
HiC
Guides for processing HiC data
HiC-data-analysis
General analysis of HiC data, including compartment A/B, domains and loops.
hic-pipeline
HiC uniform processing pipeline
HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
HiC_data
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
HiC_tools
A collection of tools for Hi-C data analysis
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
MCF10APromoterAnalysis
Processing scripts for ChIP/RNA/HiC-Seq data from MCF10A cells and derivative cell lines
mustache
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
NGS-analysis
二代测序数据分析
NGSpipe2go
a set of NGS pipelines
PDXHiC_supplemental
Supplemental scripts for the PDX Hi-C paper
PPP
Repository for pipeline code
public_scripts
collection of bioinformatic scripts
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
scripts
A place to store my bioinformatics scripts
xssh1
VPS for LINUX