usb-radiology / VertebraeFx

VertebraeFx

This contains the model, test samples and code to run the pipeline to detect vertebrae fractures.

Pre-requistes

To run this pipeline, following packages are needed:

mirtk: http://mirtk.github.io/ nnUNet: https://github.com/MIC-DKFZ/nnUNet

nnUNet_install_pretrained_model_from_zip model/vertebrea.zip

Additional python libraries are defined in: requirements.txt

Code

To get the latest python code run the following command:

git clone https://github.com/usb-radiology/VertebraeFx.git

run the code

bash example_usage.sh

Here the code and model code of the Paper "Automated Fracture Detection in CT Scans of the Lumbar Spine using Deep Learning" from Glessgen et. al. will be published once the paper is published. Stay tuned.