urwahnawaz

ABACBS_2024_hackathon_agentic_wf

ollama

Get up and running with Llama 3.2, Mistral, Gemma 2, and other large language models.

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

tripseq-analysis

Analysis tools for TrIP-seq data.

raincloudplots

{package} The easy way to create raincloud plots

LLM-scientific-feedback

Can large language models provide useful feedback on research papers? A large-scale empirical analysis.

neuroexpresso

:bar_chart: Gene expression in neuroexpresso database

ViennaRNA

The ViennaRNA Package

Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASD

Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".

Intro-to-rnaseq-hpc-salmon-flipped

Introduction to bulk RNA-seq

trackplot

Generate IGV style locus tracks from bigWig files in R

nif_finder

NMD Inducible Feature Finder

CRIES

Counting Reads for Intronic and Exonic Segments

UPF3

Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD

Enrichment-Analysis

From RNA-seq raw reads to enriched pathways by DEGs

DTUinPDbrain

"Source code for "Differential transcript usage in the Parkinson's disease brain"

chatgpt-shell

ChatGPT and DALL-E Emacs shells + Org babel 🦄 + a shell maker for other providers

UpSetR

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

GOplot

:exclamation: This is a read-only mirror of the CRAN R package repository. GOplot — Visualization of Functional Analysis Data. Homepage: https://github.com/wencke/wencke.github.io Report bugs for this package: https://github.com/wencke/wencke.github.io/issues

complex-upset

A library for creating complex UpSet plots with ggplot2 geoms

drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

ggtranscript

Visualizing transcript structure and annotation using ggplot2

coGSEA

coGSEA : Comparative Gene Set Enrichment Analysis

tidytuesday

Official repo for the #tidytuesday project

DT

R Interface to the jQuery Plug-in DataTables

vissE

An R/Bioconductor package to identify higher-order molecular phenotypes

ASD_lncRNAs

MetBrewer

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

awesome-dataviz

:chart_with_upwards_trend: A curated list of awesome data visualization libraries and resources.