urbanslug

Njagi Mwaniki's repositories

wai-devel

A development server for wai applications.

Language:HaskellMIT10 5 22

dsa

Degenerate String Aligner based on dwflambda

Language:RustGPL-3.07 20

wfa

Rust WFA and WFλ

Language:RustGPL-3.07 1 1

wffilter

Filter over local alignments with a global alignment.

Language:RustMIT5 20

flex-vg

Language:Rust3 1 1

povu

sketch of bubble detection via dominator trees

Language:C++MIT200

wflambda

Rust implementation of wflambda.

Language:RustGPL-3.02 10

dwflambda

wfλ for degenerate texts

Language:RustGPL-3.01 20

notes

Language:Shell1 10

aedso

Generate an EDS from a VCF and Fasta

Language:RustGPL-3.001 3

ALeS

ALeS: Adaptive-length spaced-seed design

Language:C++GPL-3.0000

Bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Language:C++GPL-3.0000

eds

(E)D Text parser

Language:RustGPL-3.0000

fbox

Utility functions

Language:RustGPL-3.0000

guix-genomics

guix packages for bioinformatics software

Language:Scheme000

hsx

Language:C++01 1

junctions

Compare pangenomes using ED-Strings

Language:C++GPL-3.0030

lastz

Program for aligning DNA sequences, a pairwise aligner.

Language:CMIT000

MashMap

A fast approximate aligner for long DNA sequences

Language:C++NOASSERTION000

mashz

Language:CMIT030

mutatrix

genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms

Language:C++MIT000

ndarray-to-img

Visualize (sparse) matices

Language:RustGPL-3.001 1

nested-data-structure-traversal

000

njagi.me

Personal website/blog

Language:HTML010

pggb

the pangenome graph builder

MIT000

simed

Simulate Degenerate Text

Language:Rust000

urbanslug.github.io

Language:HTMLMIT000

wfilter

Language:Rust010

wflign

the we-flyin WFA-guided ultralong tiling sequence aligner

MIT000

wfmash

base-accurate DNA sequence alignments using WFA and mashmap2

Language:C++MIT000