universvm

PyDSSP

A simplified implementation of DSSP algorithm for PyTorch and NumPy

spacedrive

Spacedrive is an open source cross-platform file explorer, powered by a virtual distributed filesystem written in Rust.

keygen

OpenSCAD tools for generating physical keys

unilm

Large-scale Self-supervised Pre-training Across Tasks, Languages, and Modalities

torchscale

Foundation Architecture for (M)LLMs

libby-download-extension

peptide-distance-analysis

This repository contains the codebase to reproduce the results presented in the paper "Assessing the Generalization Capabilities of TCR Binding Predictors via Peptide Distance Analysis" by Castorina et al.

obsidian-pandoc-templates

A repository for pandoc templates. Geared for Obsidian.

obsidian-enhancing-export

This is an enhancing export plugin base on Pandoc for Obsidian (https://obsidian.md/ ). It's allow you to export to formats like Markdown、Markdown (Hugo https://gohugo.io/ )、Html、docx、Latex etc.

obsidian-omnisearch

A search engine that "just works" for Obsidian. Supports OCR and PDF indexing.

ob-table-enhancer

Manipulate markdown tables without touching the source code in Obsidian.

obsidian-open-in-new-tab

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

TargeneCore.jl

Core Functionalities for TL-GWAS

TMLE.jl

A pure Julia implementation of the Targeted Minimum Loss-based Estimation

TargetedEstimation.jl

UKBMain.jl

To work with a UKB main dataset

targene-pipeline

Nextflow pipeline for Targeted-Learning of genetic effects

obsidian-canvas-moc

Converts MOC note files to an obsidian canvas

obsidian-chorded-hotkeys

Type multiple letters at the same time to trigger text insertion, template insertion, or command execution.

obsidian-grammarly-plugin

Add Grammarly spellchecking to Obsidian.md.

ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers

a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)

disent

🧶 Modular VAE disentanglement framework for python built with PyTorch Lightning ▸ Including metrics and datasets ▸ With strongly supervised, weakly supervised and unsupervised methods ▸ Easily configured and run with Hydra config ▸ Inspired by disentanglement_lib

poke-env

A python interface for training Reinforcement Learning bots to battle on pokemon showdown

timed-design

Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis

clinical-super-mri

Code for "Deep Attention Super-Resolution of Brain Magnetic Resonance Images Acquired Under Clinical Protocols".

LovelyPlots

Matplotlib style sheets to nicely format figures for scientific papers, thesis and presentations while keeping them fully editable in Adobe Illustrator.

vapeplot

matplotlib extension for vaporwave aesthetics

deepcourse

Learn the Deep Learning for Computer Vision in three steps: theory from base to SotA, code in PyTorch, and space-repetition with Anki

obsidian-link-converter

Obsidian Plugin to scan all your links in your vault and convert them to your desired format.