Alex Kanitz's repositories
connexion-flask-patch-for-foca
Testing how Flask and Connexion could be patched to allow type inferences for FOCA config.
cwl-example-workflows
Example workflows written in CWL
cwl-tes
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
cwl-tes-temp
Temporary fork of unmerged, inaccessible pull request providing OAuth2 support; manually edited
git-management
Scripts & cookiecutters to interact with Git repository hosting services
msa_group_compare
Workflow to compare two sequence groups by multiple sequence alignment and distance tree
RD_pipeline
CWL WES-TES
semantic-releases
Testing out config for using semantic releases
TESK
GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes
test-git-flow
Testing Git flow with clean linear commit history based on a main, dev and feature branches
travis-ci-examples
Example Travis CI configs
V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
wes-test-workflow-attachment
Verify that the workflow attachment parameter of a GA4GH WES implementation is functional
workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.