ulupo

giotto-tda_demo

Supporting repository for tutorial sessions on giotto-tda

AMLD_L2F

alphafold

Open source code for AlphaFold.

CCMgen

cechmate

Custom filtration constructors for Python

ColabFold

Making Protein folding accessible to all via Google Colab!

DiffPaSS

Differentiable Pairing using Soft Scores

DIPOLE

DIstributed Persistence-Optimized Local Embeddings

flagser

Computing homology of directed flag complexes (based on https://github.com/Ripser/ripser). Online version: https://homepages.abdn.ac.uk/neurotopology/flagser.html

giotto-ph

High performance implementation of Vietoris-Rips persistence.

giotto-tda

giotto-tda_AIS

gitignore

A collection of useful .gitignore templates

gudhi-devel

The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.

gumbel-sinkhorn

PyTorch implementation of LEARNING LATENT PERMUTATIONS WITH GUMBEL-SINKHORN NETWORKS

JClinic

Simple protein property prediction

L2F_Tennis_Challenge

Machine learn an improved Roger Federer and consistently beat Rafael Nadal!

PerMaViss

Persistence Mayer Vietoris spectral sequence

pyflagser

ripser

Ripser: efficient computation of Vietoris–Rips persistence barcodes

ripser.py

A Lean Persistent Homology Library for Python

Sample_Potts_model

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

swalign

Smith-Waterman local aligner

ulupo.github.io

Umberto Lupo's personal page