Ulthran

ShotgunUnifrac

allnews

Daily email report of top headlines from a range news sources

bioconda-recipes

Conda recipes for the bioconda channel.

conda_env_check

GitHub Action for keeping conda envs up to date

ctbus_site

A site for ctbus

DEMIC

DEMIC PTR analysis software in the form of an R package

flask-cognito-lib

A Flask extension that supports protecting routes with AWS Cognito following OAuth 2.1 best practices

GenusFinder

Given a bacterial 16S gene, infer the genus by placing it on a tree of similar sequences

git-ref

Reference for common things to do on GitHub

heyfastq

FASTQ utilities in pure python with no dependencies

mortar

Bomb your friends. Upgrade your mortar. Bomb them some more!

pycov3

A package for generating cov3 files used in DEMIC

sbx_demic

A sunbeam extension to run DEMIC, a peak-to-trough ratio generator for bacteria short-reads

sbx_demic_ref

sbx_genomad

sbx_marker_magu

Sunbeam extension for running Marker-MAGu software

sbx_metaphlan4

Sunbeam extension for metaphlan 4 (compatible with sunbeam 4)

sbx_mgv

sbx_phold

sbx_seeker

simreads

Simulate good (or bad) test data for your bioinformatics workflow

snakemake-executor-plugin-aws-batch

A Snakemake executor plugin for AWS Batch

snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster

snakemake-interface-common

Common functions and classes for Snakemake and its plugins

stackebrandtcurves

test-containerize

test_branch_creation_workflow

Ulthran

unassigner

Type strain identification for 16S reads

usedist

Functions for distance matrix objects in R.