Charlie's repositories
spellcheck
An app for spellchecking
ctbus_site
A site for ctbus
q2-unassigner
QIIME2 plugin for unassigner
tablemusthave
Define and check constraints for data tables
flask-cognito-lib
A Flask extension that supports protecting routes with AWS Cognito following OAuth 2.1 best practices
prefect
Prefect is a workflow orchestration framework for building resilient data pipelines in Python.
heyfastq
FASTQ utilities in pure python with no dependencies
pycov3
A package for generating cov3 files used in DEMIC
usedist
Functions for distance matrix objects in R.
bioconda-recipes
Conda recipes for the bioconda channel.
snakemake-interface-common
Common functions and classes for Snakemake and its plugins
snakemake-executor-plugin-aws-batch
A Snakemake executor plugin for AWS Batch
unassigner
Type strain identification for 16S reads
snakemake-executor-plugin-slurm
A Snakemake executor plugin for submitting jobs to a SLURM cluster
sbx_marker_magu
Sunbeam extension for running Marker-MAGu software
DEMIC
DEMIC PTR analysis software in the form of an R package
simreads
Simulate good (or bad) test data for your bioinformatics workflow
git-ref
Reference for common things to do on GitHub
sbx_metaphlan4
Sunbeam extension for metaphlan 4 (compatible with sunbeam 4)
conda_env_check
GitHub Action for keeping conda envs up to date