Utz Ermel (uermel)

uermel

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Location:Redwood City, CA

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Utz Ermel's repositories

Artiatomi

This is the official Artiatomi cryo electron tomography package

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artiatomi-tools

Tools based on the Artiatomi cryo-ET package.

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chimerax-ome-zarr

OME-Zarr support for ChimeraX

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mrc2omezarr

Convert MRC files to OME-Zarr files.

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tem-tools

Useful files and scripts for transmission EM

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cAligner

3D alignment of cryo electron tomographic tilt series

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chimerax-remotebrowser

Browse and open images from remote storage locations in ChimeraX.

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cryohub

IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.

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filesystem_spec

A specification that python filesystems should adhere to.

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GCtfFind

GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series

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imodmodel

IMOD model files as pandas dataframes in Python

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remotebrain

Run membrain-seg with image files on AWS S3

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VNTI-to-Benchling

A python 3 script to convert VectorNTI type primer archives to a Benchling-importable format. Not affiliated with either Benchling or VectorNTI.

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