ucscXena

ucsc-xena-client

Functional genomics browser

xenaPython

Python API for Xena Hub

xena-GDC-ETL

Extract, transform and load GDC data onto UCSC Xena

wrangle

data_wrangling

ucsc-xena-server

Turn-key functional genomics data server.

cohortMetaData

data cohort meta data displayed on xena cohort page; search by cohort tags

kaplan-meier

Basic kaplan-meier methods in javascript

gitbookdocs

Documentation for our gitbook

Xena_DE_Analysis_Pipeline

XenaGoWidget

Xena Gene Set Viewer (demo: http://xenademo.berkeleybop.io/xena)

client-template

react template for client-side development

ehmutable

js immutable helpers looking vaguely like clojure

ux-resource-for-ucsc-genomics-institute

xenaH5

python scripts for converting 10x genomics single cell RNAseq data to Xena dense matrix file

fast-deep-equal

The fastest deep equality check with Date and RegExp support

geneset-analysis-service

geotiff.js

geotiff.js is a small library to parse TIFF files for visualization or analysis. It is written in pure JavaScript, and is usable in both the browser and node.js applications.

probeMaps

tmpdownload

ucsc-xena-wasm

wasm methods for UCSC xena

ucscxena.github.io

Build a Jekyll blog in minutes, without touching the command line.

viv

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

xena-analysis-grails

Xena-GDC-auto-test

Xena-GDC-Detect_Missing_Datasets

This is testing script that checks for differences between data sets on the Xena hub and the GDC, providing the user with specific datasets that need updating.

xena-geneset-analysis-service

node API service that runs and caches analysis results for genesets

xena-web

landing page

xena_blitzGSEA_appyter

XenaAnalysisService

xenaConvert