U-BRITE

U-BRITE's repositories

canAI

Comparing feature extraction methods for biomarker discovery in a prostate-cancer study.

Language:Jupyter NotebookMIT5 40

MedvAIsor

MedvAIsor( Medicine + Advisor + AI) is AI-based personalized drug screening for cancer treatment

Language:Jupyter NotebookMIT5 30

u-brite-bootcamp

All presentation slides for the U-BRITE bootcamp 07/29/2022

5 30

mCIRCrna

Integrating circadian transcriptomes with muscle snRNA-seq data

Language:HTMLMIT4 30

rlhf_attis2023

Google Colab friendly version of TRL's https://github.com/lvwerra/trl/blob/main/examples/toxicity/scripts/gpt-j-6b-toxicity.py example for ATTIS 2023.

Language:Jupyter Notebook4 40

hackin-omics-2022

A repository with details related to our hackathon including a list of projects, resources, and our goals.

MIT3 120

TeamADGuy

Using Graph Neural Network to decrypt Personalized Medicare in Alzheimer's Disease

Language:Jupyter NotebookMIT3 3 1

TeamVecna-scDehashR

Rshiny based Analysis and Visualization tool for single cell pooled sequencing data (Hashed data. e.g CITE-Seq)

MIT300

BiocSwirl

The repository for the BiocSwirl content for the Ubrite hackathon 2022

Language:HTMLMIT2 50

ImageNomeR

Image, Genome/Transcriptome Explorer (fMRI)

Language:Jupyter NotebookMIT2 40

ReproCanAtlas

Identifying cancer-related signatures of endometrial and ovarian cancer to develop a reproductive cancer atlas.

Language:HTMLMIT2 4 1

SigSPLICE

Single Cell Splicing Analysis of Pancreatic Neuroendocrine Cancer

MIT2 30

Single-cell-reciter

Single-cell topics modeling using deep learning and multi-omics enrichment analysis.

Language:Jupyter NotebookMIT2 40

SNVariome

Integrating protein-protein interactions and protein structure to enhance the clinical variant interactome.

Language:RMIT2 4 10

team-repo-template

A template repository for teams during Hackin' Omics 2022.

MIT2 30

team_papaki

Integrating multi-omics data with autoencoders for breast cancer survival prediction.

Language:RMIT2 40

2022-07-26_Hackathon_Research_Computing

Research Computing tools and information created for the 2022 Hackin Omics hackathon.

MIT1 30

HeriVar

Quantifying the combined heritability of a trait based on a multi-ethnic LD panel with equal distribution of samples among each ancestry group.

Language:ShellMIT1 1 1

o-miner

Patient stratification and molecular mechanism identification using patient clinotypes and transcriptomics embeddings

Language:Jupyter NotebookMIT1 30

gcp-for-bioinformatics

GCP for Bioinformatics Researchers

Language:Jupyter NotebookApache-2.0000

LDpredChrByChr

Make LDpred run chromosome by chromosome

Language:Python000

team-leaders-2022

A repository to share resources and a readiness checklist with team leaders.

MIT03 1