tzom

yHydra

yHydra is a GPU-accelerated open search for MS-based proteomics data.

AHLF

Deep learning model (Temporal conv net, using dilated conv layers) detects post-translational modified peptides based on their ms/ms spectrum.

dnovo2

de novo sequencing

PXD010000

AHLF_interactions

Compute interactions between features according to predictions from AHLF.

alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.

composetest

ctc_loss

testing ctc loss implementation in tensorflow

FASTA_subset

generic_tfmodel

keras-tuner-docker

keras-tuner-grpc

mdwiki-seed

Alternative to https://github.com/Dynalon/mdwiki-seed

ms2pip_c

MS2PIP: MS2 Peak Intensity Prediction

ms2rescore

Sensitive PSM rescoring with predicted MS² peak intensities using MS²PIP, DeepLC, and Percolator.

performer

Tensorflow implementation of a linear attention architecture

pip_install_test

prosit

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7

Solder-Reflow-Plate

PCB based SMD reflow plates

speclibGEN

test_alphapept

tf_dataset_generator_shuffle_test

tf_dataset_generator_shuffle_test

ubuntu-k8s

deploys ubuntu pods on kubernetes

webapp_testing