Tomasz Żok's repositories
rnapolis-py
A Python library containing RNA-related bioinformatics functions and classes.
BioCommons
Library with common classes, data structures and embedded static knowledge useful in bioinformatics libraries
mcq4structures
A parent project for a set of subprojects related to Mean of Circular Quantities (MCQ).
imas-hello-world
A collection of simple Hello World! programs for IMAS
sgd-annotator
Annotate sequencing profiles of the S. Cerevisiae with metadata from SGD (Saccharomyces Genome Database) and Gene Ontology
academic-poster-template
An HTML+CSS template for making more accessible posters
CASP15_knotted_artifacts
Programs used in "Knotted artifacts in predicted 3D RNA structures"
doi-to-pmid
Gather info about PMID and PMCID from provided DOI.
eosc-futuregateway
An ansible-container project which builds docker images containing FutureGatewayFramework services
fr3d-python
Python implementation of FR3D
fr3d-python-adapter
An adapter for fr3d-python, which reads an mmCIF file and produces a unified list of RNA interactions
grid-and-cloud-engine
Code of the Grid & Cloud Engine
maxit-docker
A Dockerfile to wrap MAXIT software to convert between PDB and PDBx/mmCIF seamlessly
mcq-clustering
A Java project combining general and ready-to-use clustering algorithms
occupancy-splitter
Optimally splits PDBx/mmCIF files with RNA chains having occupancy factor less than 1.0
openmm-utils
A set of utilities made with OpenMM
TzokCommons
A Java project with all useful utility classes, types, interfaces, etc.
udocker
A basic user tool to execute simple docker containers in batch or interactive systems without root privileges
varna-tz
A fork of VARNA (http://varna.lri.fr/)