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Tom Willis (twillis209)

twillis209

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Tom Willis's starred repositories

CVID_GWAS_summary_statistics_immunochip

publication associated with the CVID gwas summary data 2015 NC paper: https://www.nature.com/articles/ncomms7804

License:GPL-3.0Stargazers:1Issues:0Issues:0

buefy-next

Lightweight UI components for Vue.js (Vue3) based on Bulma

Language:VueLicense:MITStargazers:100Issues:0Issues:0

gwasrapidd

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

Language:RLicense:NOASSERTIONStargazers:88Issues:0Issues:0

snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster

Language:PythonLicense:MITStargazers:13Issues:0Issues:0

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Language:RLicense:MITStargazers:6208Issues:0Issues:0

M2TWEOP-library

Completely rewritten version of EOP

Language:C++License:GPL-3.0Stargazers:48Issues:0Issues:0

reading

A collection of papers and books that Storey Lab members should read and others may find useful

Stargazers:48Issues:0Issues:0

bumps

Code for manipulating results for bumps rowing races, generating results charts, etc.

Language:PythonLicense:MITStargazers:2Issues:0Issues:0

CLI11

CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

Language:C++License:NOASSERTIONStargazers:3230Issues:0Issues:0

TwoSampleMR

R package for performing 2-sample MR using MR-Base database

Language:RLicense:NOASSERTIONStargazers:403Issues:0Issues:0

HLA-LA

Fast HLA type inference from whole-genome data

Language:C++License:GPL-3.0Stargazers:120Issues:0Issues:0

HLA_analyses_tutorial

A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying HLA alleles driving complex disease"

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:52Issues:0Issues:0

locuszoomr

A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.

Language:RLicense:GPL-3.0Stargazers:17Issues:0Issues:0

romeremastered

Total War: ROME REMASTERED modding documentation

Language:PythonStargazers:33Issues:0Issues:0

radian

A 21 century R console

Language:PythonLicense:MITStargazers:1975Issues:0Issues:0

GWAS_tools

Pipeline for GWAS summary statistic dataset processing

Language:ShellStargazers:6Issues:0Issues:0

openmw

OpenMW is an open-source open-world RPG game engine that supports playing Morrowind. Main repo and issue tracker can be found here: https://gitlab.com/OpenMW/openmw/

Language:C++License:GPL-3.0Stargazers:5255Issues:0Issues:0

all-of-statistics

Self-study on Larry Wasserman's "All of Statistics"

Language:Jupyter NotebookStargazers:936Issues:0Issues:0

latex-bibitemstyler

Automatically exported from code.google.com/p/latex-bibitemstyler

Language:C#License:GPL-2.0Stargazers:146Issues:0Issues:0

plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

Language:CStargazers:400Issues:0Issues:0

argparse

Argument Parser for Modern C++

Language:C++License:MITStargazers:2528Issues:0Issues:0

bumps-results

Cambridge and Oxford Bumps results

License:CC-BY-4.0Stargazers:4Issues:0Issues:0

barrier

Open-source KVM software

Language:CLicense:NOASSERTIONStargazers:26884Issues:0Issues:0

gwas-sumstats-harmoniser

GWAS Summary Statistics Data Harmonisation

Language:PythonStargazers:18Issues:0Issues:0

kableExtra

Construct Complex Table with knitr::kable() + pipe.

Language:RLicense:NOASSERTIONStargazers:684Issues:0Issues:0

topr

topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire genome (Manhattan plot) or in the more detailed regional view.

Language:HTMLLicense:NOASSERTIONStargazers:43Issues:0Issues:0

orbtree

Generalized order-statistic tree implementation in C++

Language:C++License:BSD-3-ClauseStargazers:4Issues:0Issues:0

gentropy

Open Targets python framework for post-GWAS analysis

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:29Issues:0Issues:0

genetics-api

Open Targets Genetics GraphQL API

Language:ScalaLicense:Apache-2.0Stargazers:11Issues:0Issues:0

ScriptsForYengo2022_HeightGWAS

This folder contains various scripts used in Yengo (2022) to perform meta-analyses, winner's curse correction, etc.

Language:RStargazers:2Issues:0Issues:0