tvkent

GERPplusplus

GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.

Pi-Between

Using ANGSD and Python/R to calculate and plot pi-between in windows along the genome

CV

Degeneracy

4folds and 0folds

tvkent.github.io

aedes_demography

Scripts for Demographic history and the efficacy of selection in the globally invasive mosquito Aedes aegypti

angsd-wrapper

Utilities for analyzing next generation sequencing data

Bioinformatics_club

notes from workshop

BioinformaticsUtils

general scripts for bioinformatics

BIS180L_web

Course Website for UC Davis BIS180L

CrossoverMeme

eve102

Fijiensis

fijiensis recombination hotspot work

GenomeSize

Failed attempt to predict genome size with GBS sequencing data

gh-usernames

repository to illustrate forking and to collect github usernames

Grandiflora_recombination

recombination mapping project in Capsella grandiflora

hapcut

Inbreeding

Notes on calculating inbreeding using ngsF

jkreinz.github.io

Kent2016glumaepatula

random rice project things

Millennial

A minimalist Jekyll theme for running an online publication

minsum

scripts and description of methods from Sas et al.

msr

Process MS results in R, in a tidy way

phasedibd

Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)

scripts

mostly python scripts

shiny_popgen

Shiny apps for teaching Population Genetics

SpaceMix

Thetas_and_Tajimas_D

Notes on calculating thetas and tajD using ANGSD/angsd-wrapper